Don’t Let Your Search Get Lost In Translation

When conducting a literature search on a topic, many times the search is conducted in more than one database for more comprehensive results. And in the case of systematic reviews, such a practice is required.

Even more challenging, when it comes to systematic reviews, is that the searches in each database should be as similar to one another as possible. The process of taking an original search strategy from one database and making only necessary changes (controlled vocabulary, syntax, field codes), adapt the strategy to another database is referred to as “search translation.”

The Parts of a Search

There are several parts to complex literature searches that combine multiple elements: Boolean operators, nesting, controlled vocabulary, field codes, quotations, proximity, and special operators.

Boolean Operators

Boolean Operators (AND, OR, and NOT) are the basis of how to combine concepts to create a search.

While nearly all databases use Boolean operators in the same manner and meaning, it’s important to know when capitalization is necessary and when it is not.

Nesting

Nesting uses parentheses much in the same way they are used in Algebra — that is, whatever is inside the pair of parentheses must be done first, and from there a search (just like math), will be conducted from left-to-right.

Since nesting is about how to read and execute a search, it typically will not change between databases.

Controlled Vocabulary

Controlled vocabulary refers to the set dictionary of terms for that database, such as MeSH (Medical Subject Headings) and EmTree. MeSH is the National Library of Medicine’s controlled vocabulary, and they create the MeSH terms for PubMed. These terms may not always be identical to the MeSH terms found in MEDLINE on another platform though, and they require different identification.

Unfortunately there is no easy way to translate these terms, but using the built in databases (MeSH Database, MEDLINE Term Finder, EmTree Database, etc) you can quickly find the most closely aligned term to use.

Field Codes

Field codes are essentially the special codes for each database that tell the database where to search for that term. For example [tiab] in PubMed tells the database to search that term in the title and abstract fields only. In MEDLINE the title/abstract field code is .ti,ab, whereas in Embase it is :ti,ab.

Quotations

In order to search for a specific phrase searches must use quotations. However, depending on the database, they may require double quotations (“smart quotes”), straight quotations, or single quotations.

Proximity

Proximity operators (also called adjacency in some databases) are essentially a middle-ground between searching across an entire record and specific quotations. They allow the user to select how close they want to two terms to appear in a record. Every database uses slightly different proximity operators and syntax, and some have strict rules with how they can be used.

Special Operators

Special Operators are operators that can be added to search terms to modify what is searched. Examples of special operators are truncation and wildcards, which expand the variations of the specified term that are searched. An asterisk (*) is the common operator for truncation in many databases.

Where to Start

All the information on how to search each database according to its own rules and/or the rules of an online platform it resides on can be found in the database/platform’s Help section.

Typically, this translation of search strategies is done by a librarian manually but automated/semi-automated tools are being gradually introduced. A beta version of such tool (Query Translation) is currently available in Embase.com, the Elsevier interface of the Embase database. It will assist in “translating” PubMed searches into the Embase.com search syntax.

The tool allows entering a search term or the whole search strategy (query) and get it translated to Embase syntax.


Searching with Field Codes

While not necessarily “secret”, field codes are an underutilized feature found in nearly all scholarly literature databases. 

A field is a specific part of a record found within a database. A field code (also sometimes referred to as a field tag) is a word, abbreviation, or letters that are tied to a specific field within a record. Some common examples of fields are: title, author, and publication year. Every database has their own set of field codes for the various fields found in their records. Here we discuss how you can leverage these field codes to focus your literature searches.

Adding Field Codes to your Search

The default, or basic search, in most databases, is a general all field or keyword search. While this may be fine for simple searches, as searches become more complex, sometimes there needs to be more options available. That is where field codes come in.

The Advanced Search features found in most databases is where you can manipulate your search strategies to include field codes. In some cases available or common field codes are listed on this page. Depending on the database, you may or may not be able to add multiple field codes to a single search. If you are limited to a single field code, use the Boolean Operator OR to combine multiple search strings. 

Commonly Used Field Codes in Select Databases

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2024 MeSH Update and PubMed Year-End Activities

Tis the season…for the National Library of Medicine’s (NLM) Annual MeSH Processing for 2024!!

Every November-December brings the much anticipated annual changes to PubMed’s MeSH (Medical Subject Headings) structure for the controlled vocabulary associated with MEDLINE.

Types of MeSH Updates

Some MeSH, subheadings, and supplementary concepts cease to be, some are renamed, new MeSH and subheadings are incorporated, and some MeSH change their location in the MeSH hierarchical tree structure (e.g. a MeSH moves under a different broader heading) or combine with other terms. Some Supplemental Concepts are also upgraded to a MeSH Descriptor status. Below are some of the types of changes and updates made during the Annual MeSH Update.

  • New MeSH Descriptors — brand new MeSH Descriptors
  • New Supplementary Concepts — brand new terms that currently do not warrant a full MeSH Descriptor
  • Changed MeSH Descriptors — MeSH terms that were modified (either by name or hierarchical location), also referred to as the “Preferred Term”
  • Upgraded MeSH Descriptors — terms that moved from Supplementary Concepts to MeSH Descriptors
  • Combined Terms — either MeSH Descriptors or Supplementary Concepts that were combined with other terms under a single term
  • Split Terms — either MeSH Descriptors or Supplementary Concepts that are split to expand the level of description and detail
  • Removed Terms — either MeSH Descriptors or Supplementary Concepts that were removed, either due to being combined, upgraded, or renamed

What’s New in 2024

The 2024 MeSH updates includes a variety of important and much-needed updates!

One of the biggest and most needed expansion in the 2024 update is that of the Psychological Stress concept, with dozens of new MesH Descriptors within the concept of Psychological Stress, including:

  • Coping Skills
  • Psychological Growth
  • Financial Strain
  • Psychological Recovery
  • School Shooting
  • Stress Experience

Impacts on Searching PubMed

MeSH structure changes may affect already saved searches, including My NCBI alerts; for example ceased in 2024 MeSH may be part of your search strategy designed/saved in the previous years and the deleted/ceased to be term will not retrieve any references.

If you have searches saved in your My NCBI account and/or you are getting PubMed e-mail alerts, or if you need to update your Systematic Review based on your previous search strategy, you may want to consult a Research Informationist to ensure your saved searches are not affected by the annual changes in the MeSH terminology. Don’t hesitate to ASK US!

A Note by the National Library of Medicine says: “Typically, NLM does not retroactively re-index MEDLINE citations with new MeSH heading concepts. Therefore, searching PubMed for a new MeSH term tagged with [mh] or [majr] effectively limits retrieval to citations indexed after the term was introduced. Searchers may consult the MeSH database to see the previous indexing terms most likely used for a particular concept before the new MeSH heading was introduced. For terms without previous indexing information, consider the next broader term(s) in the MeSH hierarchy. For more searching guidance, see the on-demand class MeSH Changes and PubMed Searching.