Author Names: Manuscript Submission & PubMed Indexing

Anyone who has ever tackled the task of compiling a comprehensive CV – say of a researcher with a common last name who has published over multiple decades while working at several different institutions – knows that this is no easy task. Below are some reasons for the complexity, and some solutions for making the process more accurate and less daunting for everyone.

How did we get here?

Everyone involved in the research publication process has contributed at some time and in some way to this problem:

  • Authors who haven’t been consistent about the formatting of their name (or formatting of their institutional affiliation) when submitting their manuscripts for publication or have not provided their ORCID iD when prompted by the manuscript submission system;
  • Publishers who don’t provide database producers with full author name information (for example, only providing initials for the authors’ first and middle initials) or only ask for one co-author’s ORCID iD or do not require provision of an ORCID iD at all;
  • Database producers, like NLM’s PubMed, who may have not been consistent over time regarding how they handle adding the author information to their database records (more on that below).

And as with any structured database, information retrieval is only ever as good as the quality and extent of information contained in the database. In the case of PubMed, the quality control at NLM has always been top notch, but the extent of indexing certain fields (like the Author Name filed) has varied over time as their cataloging policies have evolved.

For example:

The take-home message from these cataloging details is that searching in PubMed will therefore need to be adjusted accordingly, depending on the publication dates of the author citations needed to be identified. Furthermore, authors themselves should realize that they are very much in control over what information ends up in the PubMed record since it all starts with the information that they themselves provide at the point of the manuscript submission to a journal publisher.

In fact, a new tool has recently been developed by cancer researchers at the National Cancer Institute called the AuthorArranger that can help authors provide more complete/accurate information to publishers at the time of manuscript submission. “AuthorArranger was created by Mitchell Machiela and Geoffrey Tobias in collaboration with the NCI Center for Biomedical Informatics and Information (CBIIT). Support for AuthorArranger comes from the 2018 DCEG Informatic Tool Challenge.”

From their website:

“AuthorArranger is a free web tool designed to help authors of research manuscripts automatically generate correctly formatted title pages for manuscript journal submission in a fraction of the time it takes to create the pages manually. Whether your manuscript has 20 authors or 200, AuthorArranger can save you time and resources by helping you conquer journal title pages in seconds.

Simply upload a spreadsheet containing author details ordered by author contribution, or download AuthorArranger’s easy-to-follow spreadsheet template and populate it with author and affiliation details. Either way, once your author information is uploaded AuthorArranger will allow you to make format choices based on the submission rules of the journal. When finished, you get a downloadable and formatted document that has all your authors and affiliations arranged for journal submission.”

The AuthorArranger tool was featured in a recent Cell Press “CrossTalk” blogpost.

For help with Author Name searching, manuscript submission, or training on Updating Scientific CVs – just Ask Us!

 

Research Data Management and COVID-19

We’re excited to introduce a new blog post category in Research Data Management (RDM) as part of the RDM Services the Library is offering! We’ll be inaugurating this new category with a series of posts in the coming weeks dedicated to some of the developments in open data resources and tools in response to the global COVID-19 pandemic.

Research Data and COVID-19

As a result of the COVID-19 pandemic, many researchers with limited access to their laboratories have been turning to publicly available datasets with which they can run their own analysis, provide their own insights, or combine with their original research data to identify new trends. While the remote-work model creates plenty of challenges for researchers, it also presents a unique opportunity to highlight the value of data sharing on a global scale.

Data reuse certainly comes with a variety of limits and caveats, such as properly citing data sources, protecting human subjects by providing adequate levels of de-identification and removal of PHI, ensuring credit for data creators, etc. Despite these challenges, many funding agencies, publishers, and scientific organizations encourage data sharing. In fact, during this global pandemic, many researchers in the private and public sectors are choosing to share their datasets through collaborative discovery platforms and open source repositories. Even many traditionally for-pay repositories and publishers have been developing open-access discovery platforms to assist researchers in finding and reusing COVID-19 datasets. 

In the next RDM post on COVID-19 data resources, we’ll showcase some of the NLM/NIH initiatives to support open datasets, resources, and tools.

Three Questions – Rebecca Meng

Next up in our Three Questions series, Rebecca Meng, Document Delivery Services Librarian.
 
What areas can you help MSK users with?
 
As a librarian on the Document Delivery Services team, I help people at MSK access scholarly materials that fall outside of MSK Library’s own specialized collection. Cancer affects the whole person, so the work and research going on at MSK covers a wide variety of disciplines—from nuclear physics to music therapy, machine learning to nutritional outcomes. It’s our team’s job to track down any resources needed to support research and evidence-based care.
 
What projects have you been working on recently?
 
Anyone who has used our services to request an article or book is familiar with ILLiad, the program we use to manage the flow of requests between our users here at MSK, our staff, and the other libraries and suppliers we work with. This year, ILLiad will be getting some much-needed upgrades—both behind the scenes, keeping our workflows efficient—and excitingly, on our public-facing webpages. We are working to customize the new ILLiad request pages for our MSK Library community. They will not only look nicer and more streamlined but will also be mobile-responsive and accessible.
 
If you could travel anywhere in the world, where would you go?
 
Like many other city-dwellers who have been sheltering in place, I’d happily go almost anywhere right now. I’m especially looking forward to visiting family in New Jersey—not exactly a far-away land, but sitting in a suburban backyard eating a bowl of noodles prepared by my Dad is my current idea of pure luxury.