Curious About the Total Number of Publications by MSK Authors in 2019?

The 2019 Synapse Publications Report is now available to help answer this question! Compiled by librarians, this report provides an analysis and documents the publications produced by MSK researchers, clinicians, nurses, and other healthcare professionals for the year in review. The final bibliography includes 5,130 works, comprised of references to research and conference papers, reviews, meeting abstracts, books and book sections. This represents an increase of over 11% from publications identified in our 2018 report.

Synapse is a public facing resource and the authoritative bibliographic database developed and maintained by the Library. Our ultimate goal is to track and showcase the wealth of knowledge attributed to Memorial Sloan Kettering.

I hope that by browsing the 2019 Synapse Publications Report, readers will gain a sense of the contributions made by MSK authors to the ever-growing body of scholarly research.

Feel free to send me an email and let me know what you think about this year’s report.

Donna Gibson
Director of Library Services

RDM and COVID-19 (Part 2): NIH/NLM Sponsored Resources, Open Datasets, and Tools

This is part 2 of a 4 part series of posts on Research Data Management and COVID-19. Click here for part 1.

The National Institutes of Health and the National Library of Medicine have put together a broad spectrum of open-access resources to provide researchers and the public specific types of data, such as:

They have also added COVID-specific features to many of their computing resources such as BLAST. These are just a few examples and they are continuing to add more datasets and research tools all the time. To find out more about their initiatives and get direct links to the individual data sources, they have compiled them into list at the Open-Access Data and Computational Resources to Address COVID-19.

NIH Office of Data Science StrategyAnother very useful government resource for COVID-19 data is the result of a collaboration between The National Center for Data to Health (CD2H), the Clinical and Translational Science Awards (CTSA), and other partner institutions. They have worked together to introduce the National COVID Cohort Collaboration (N3C). Open to membership for individual researchers as well as institutions, they provide a “pathway to rapidly share collaborative results and get attribution for your contributions.” Among the products of this group is a searchable list of COVID-19 data sources which include datasets, visualizations, code, and informational websites from a variety of national and international institutions.

In the next post in this series, we’ll highlight some of the institutional collaborations supporting open science, visualization, and computational resources in response to the COVID-19 pandemic.

Author Names: Manuscript Submission & PubMed Indexing

Anyone who has ever tackled the task of compiling a comprehensive CV – say of a researcher with a common last name who has published over multiple decades while working at several different institutions – knows that this is no easy task. Below are some reasons for the complexity, and some solutions for making the process more accurate and less daunting for everyone.

How did we get here?

Everyone involved in the research publication process has contributed at some time and in some way to this problem:

  • Authors who haven’t been consistent about the formatting of their name (or formatting of their institutional affiliation) when submitting their manuscripts for publication or have not provided their ORCID iD when prompted by the manuscript submission system;
  • Publishers who don’t provide database producers with full author name information (for example, only providing initials for the authors’ first and middle initials) or only ask for one co-author’s ORCID iD or do not require provision of an ORCID iD at all;
  • Database producers, like NLM’s PubMed, who may have not been consistent over time regarding how they handle adding the author information to their database records (more on that below).

And as with any structured database, information retrieval is only ever as good as the quality and extent of information contained in the database. In the case of PubMed, the quality control at NLM has always been top notch, but the extent of indexing certain fields (like the Author Name filed) has varied over time as their cataloging policies have evolved.

For example:

The take-home message from these cataloging details is that searching in PubMed will therefore need to be adjusted accordingly, depending on the publication dates of the author citations needed to be identified. Furthermore, authors themselves should realize that they are very much in control over what information ends up in the PubMed record since it all starts with the information that they themselves provide at the point of the manuscript submission to a journal publisher.

In fact, a new tool has recently been developed by cancer researchers at the National Cancer Institute called the AuthorArranger that can help authors provide more complete/accurate information to publishers at the time of manuscript submission. “AuthorArranger was created by Mitchell Machiela and Geoffrey Tobias in collaboration with the NCI Center for Biomedical Informatics and Information (CBIIT). Support for AuthorArranger comes from the 2018 DCEG Informatic Tool Challenge.”

From their website:

“AuthorArranger is a free web tool designed to help authors of research manuscripts automatically generate correctly formatted title pages for manuscript journal submission in a fraction of the time it takes to create the pages manually. Whether your manuscript has 20 authors or 200, AuthorArranger can save you time and resources by helping you conquer journal title pages in seconds.

Simply upload a spreadsheet containing author details ordered by author contribution, or download AuthorArranger’s easy-to-follow spreadsheet template and populate it with author and affiliation details. Either way, once your author information is uploaded AuthorArranger will allow you to make format choices based on the submission rules of the journal. When finished, you get a downloadable and formatted document that has all your authors and affiliations arranged for journal submission.”

The AuthorArranger tool was featured in a recent Cell Press “CrossTalk” blogpost.

For help with Author Name searching, manuscript submission, or training on Updating Scientific CVs – just Ask Us!